EnrichRBP.filesOperation¶

EnrichRBP.filesOperation.read_fasta_file(fasta_file='')¶

This function is used to read a sequence file in fasta format in the following form.

>hsa_circ_0000005 start:16578,end:16712
AGGCGTGGCTACTGCGGCTGGAGCTGCGATGAGACTCGGAACTCCTCGTCTTACTTTGTGCTCCATGTTTTGTTTTTGTATTTTGGTTTGTAAATTTGTAG
>hsa_circ_0000023 start:50,end:174
ACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGC
>hsa_circ_0000038 start:189,end:318
CCGTCCCCCCCACTGCCTACTCATATACCTCCAGAGCCTCCACGCACCCCTCCATTCCCTGCTAAGACTTTTCAAGTTGTGCCAGAAATTGAGTTTCCACC

Parameters:

fasta_file:str, default=''

Path to the fasta file (absolute path).

Attributes:

seqslst:list

The list used to store sequences from fasta file.

EnrichRBP.fileOperation.read_label(label_file='')¶

This function is used to read a label file in txt format in the following form.

Parameters:

label_file:str, default=''

Path to the label file (absolute path).

Attributes:

label_ls:list

The list used to store labels according to the sequences. It will be transformed to array when the function returns.